Disinhibition Bursting of Dopaminergic Neurons

Substantia nigra pars compacta (SNpc) dopaminergic neurons receive strong tonic inputs from GABAergic neurons in the substantia nigra pars reticulata (SNpr) and globus pallidus (GP), and glutamatergic neurons in the subthalamic nucleus. The presence of these tonic inputs raises the possibility that phasic disinhibition may trigger phasic bursts in dopaminergic neurons. We first applied constant NMDA and GABAA conductances onto a two-compartment single cell model of the dopaminergic neuron (Kuznetsov et al., 2006). The model exhibited disinhibition bursting upon stepwise removal of inhibition. A further bifurcation analysis suggests that disinhibition may be more robust than excitation alone in that for most levels of NMDA conductance, the cell remains capable of bursting even after a complete removal of inhibition, whereas too much excitatory input will drive the cell into depolarization block. To investigate the network dynamics of disinhibition, we used a modified version of an integrate-and-fire based model of the basal ganglia (Humphries et al., 2006). Synaptic activity generated in the network was delivered to the two-compartment single cell dopaminergic neuron. Phasic activation of the D1-expressing medium spiny neurons in the striatum (D1STR) produced disinhibition bursts in dopaminergic neurons through the direct pathway (D1STR to SNpr to SNpc). Anatomical studies have shown that D1STR neurons have collaterals that terminate in GP. Adding these collaterals to the model, we found that striatal activation increased the intra-burst firing frequency of the disinhibition burst as the weight of this connection was increased. Our studies suggest that striatal activation is a robust means by which disinhibition bursts can be generated by SNpc dopaminergic neurons, and that recruitment of the indirect pathway via collaterals may enhance disinhibition bursting

Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1

Background: The entomopathogenic nematode Heterorhabditis bacteriophora and its symbiotic bacterium, Photorhabdus luminescens, are important biological control agents of insect pests. This nematode-bacterium-insect association represents an emerging tripartite model for research on mutualistic and parasitic symbioses. Elucidation of mechanisms underlying these biological processes may serve as a foundation for improving the biological control potential of the nematode-bacterium complex. This large-scale expressed sequence tag (EST) analysis effort enables gene discovery and development of microsatellite markers. These ESTs will also aid in the annotation of the upcoming complete genome sequence of H. bacteriophora. Results: A total of 31,485 high quality ESTs were generated from cDNA libraries of the adult H. bacteriophora TTO1 strain. Cluster analysis revealed the presence of 3,051 contigs and 7,835 singletons, representing 10,886 distinct EST sequences. About 72% of the distinct EST sequences had significant matches (E value < 1e-5) to proteins in GenBank's non-redundant (nr) and Wormpep190 databases. We have identified 12 ESTs corresponding to 8 genes potentially involved in RNA interference, 22 ESTs corresponding to 14 genes potentially involved in dauer-related processes, and 51 ESTs corresponding to 27 genes potentially involved in defense and stress responses. Comparison to ESTs and proteins of free-living nematodes led to the identification of 554 parasitic nematode-specific ESTs in H. bacteriophora, among which are those encoding F-box-like/WD-repeat protein theromacin, Bax inhibitor-1-like protein, and PAZ domain containing protein. Gene Ontology terms were assigned to 6,685 of the 10,886 ESTs. A total of 168 microsatellite loci were identified with primers designable for 141 loci. Conclusion: A total of 10,886 distinct EST sequences were identified from adult H. bacteriophora cDNA libraries. BLAST searches revealed ESTs potentially involved in parasitism, RNA interference, defense responses, stress responses, and dauer-related processes. The putative microsatellite markers identified in H. bacteriophora ESTs will enable genetic mapping and population genetic studies. These genomic resources provide the material base necessary for genome annotation, microarray development, and in-depth gene functional analysis

Concrete Patching Materials and Techniques and Guidelines for Hot Weather Concreting

High early strength (HES) concrete is becoming increasingly used to repair damaged concrete pavement sections. The use of HES concrete enables the repaired pavement to be opened to traffic within hours of placing the concrete. Rapid repair of concrete pavement is an attractive solution since the traveling public is not delayed by the repair of the pavement in addition to a decrease in the amount of exposure to traffic by construction personnel; however, there are challenges due to strict requirements for opening strength and severe penalties for not achieving the target strength. This project examined failure to obtain long term strength in the construction practices of long patches in concrete pavements. The work examined issues associated with temperature on sulfate balance, flexural strength prediction (maturity methods) considering the influence of moisture (effects of self-desiccation), shrinkage mitigation techniques (internal curing), and improving the overall durability of HES concrete patching materials

Elevation angle dependence of the SMA antenna focus position

We report the measurement results and compensation of the antenna elevation angle dependences of the Sub-millimeter Array (SMA) antenna characteristics. Without optimizing the subreflector (focus) positions as a function of the antenna elevation angle, antenna beam patterns show lopsided sidelobes, and antenna efficiencies show degradations. The sidelobe level increases and the antenna efficiencies decrease about 1% and a few %, respectively, for every 10 degrees change in the elevation angle at the measured frequency of 237 GHz. We therefore obtained the optimized subreflector positions for X (azimuth), Y (elevation), and Z (radio optics) focus axes at various elevation angles for all the eight SMA antennas. The X axis position does not depend on the elevation angle. The Y and Z axes positions depend on the elevation angles, and are well fitted with a simple function for each axis with including a gravity term (cosine and sine of elevation, respectively). In the optimized subreflector positions, the antenna beam patterns show low level symmetric sidelobe of at most a few %, and the antenna efficiencies stay constant at any antenna elevation angles. Using one set of fitted functions for all antennas, the SMA is now operating with real-time focusing, and showing constant antenna characteristics at any given elevation angle.Comment: 10 pages, 6 figures; to appear in the Proceedings of SPIE Vol. 6275 "Millimeter and Submillimeter Detectors and Instrumentation for Astronomy III

The first WASP public data release

The WASP (wide angle search for planets) project is an exoplanet transit survey that has been automatically taking wide field images since 2004. Two instruments, one in La Palma and the other in South Africa, continually monitor the night sky, building up light curves of millions of unique objects. These light curves are used to search for the characteristics of exoplanetary transits. This first public data release (DR1) of the WASP archive makes available all the light curve data and images from 2004 up to 2008 in both the Northern and Southern hemispheres. A web interface () to the data allows easy access over the Internet. The data set contains 3 631 972 raw images and 17 970 937 light curves. In total the light curves have 119 930 299 362 data points available between them

A Mobile Concrete Laboratory to Support Quality Concrete, Technology Transfer, and Training

This report is a summary of work performed by the Mobile Infrastructure Materials Testing Laboratory (MIMTL) as a part of the Joint Transportation Research Program (JTRP) through SPR-3858. The development of the MIMTL began in February of 2014 and became fully operational by June of 2014. The MIMTL was deployed in the field for a total of 46 days. This report describes the activities of the MIMTL as of December 2015. The MIMTL was involved in the field testing of concrete bridges, concrete pavements, and asphalt pavements. This report describes the development of the mobile testing laboratory and provides some examples of how the MIMTL was used. The main highlights of the MIMTL’s implementation are as follows: The MIMTL’s high mobility and extensive inventory of research equipment allowed graduate students and researchers to conduct field studies on a wide range of infrastructure materials to accomplish the research objectives of their specific projects. More extensive details of the background, objectives, methods, findings, results and implementation from those projects can be found in the respective reports for those projects; The MIMTL supported a culture of safety that allowed students to work safely on jobsites in the State of Indiana ranging from roadside interstates, rural country roads, to ready-mix batching plants, often around heavy equipment, traffic, and in close quarters. During the operation of the MTIML described in this report, there were zero workplace accidents, and zero near misses reported; The MIMTL assisted in technology transfer between the infrastructure materials experts at Purdue University and contractors and suppliers in the State of Indiana. A wide range of new technologies evaluating infrastructure materials were utilized on a variety of projects. On each of these projects, MIMTL researchers educated industry personnel (contractors and suppliers), agency personnel (INDOT and local agencies), and consultants within the state. The MIMTL attended demonstrations with INDOT district and central office personnel to further highlight capabilities as well as the emerging technologies; The MIMTL was established a joint investment with partners in industry, local agencies, and INDOT. Operated by the Joint Transportation Research Program and the Local Technical Assistance Program as pay-per-use model, means this sustainable venture will offer services to researchers, industry, or agency entities that can cover the pay-per-use costs

Improvements to the APBS biomolecular solvation software suite

The Adaptive Poisson-Boltzmann Solver (APBS) software was developed to solve the equations of continuum electrostatics for large biomolecular assemblages that has provided impact in the study of a broad range of chemical, biological, and biomedical applications. APBS addresses three key technology challenges for understanding solvation and electrostatics in biomedical applications: accurate and efficient models for biomolecular solvation and electrostatics, robust and scalable software for applying those theories to biomolecular systems, and mechanisms for sharing and analyzing biomolecular electrostatics data in the scientific community. To address new research applications and advancing computational capabilities, we have continually updated APBS and its suite of accompanying software since its release in 2001. In this manuscript, we discuss the models and capabilities that have recently been implemented within the APBS software package including: a Poisson-Boltzmann analytical and a semi-analytical solver, an optimized boundary element solver, a geometry-based geometric flow solvation model, a graph theory based algorithm for determining p$K_a$ values, and an improved web-based visualization tool for viewing electrostatics

Non-perturbative dynamics of hot non-Abelian gauge fields: beyond leading log approximation

Many aspects of high-temperature gauge theories, such as the electroweak baryon number violation rate, color conductivity, and the hard gluon damping rate, have previously been understood only at leading logarithmic order (that is, neglecting effects suppressed only by an inverse logarithm of the gauge coupling). We discuss how to systematically go beyond leading logarithmic order in the analysis of physical quantities. Specifically, we extend to next-to-leading-log order (NLLO) the simple leading-log effective theory due to Bodeker that describes non-perturbative color physics in hot non-Abelian plasmas. A suitable scaling analysis is used to show that no new operators enter the effective theory at next-to-leading-log order. However, a NLLO calculation of the color conductivity is required, and we report the resulting value. Our NLLO result for the color conductivity can be trivially combined with previous numerical work by G. Moore to yield a NLLO result for the hot electroweak baryon number violation rate.Comment: 20 pages, 1 figur